CompileMRI.jl

Compiled executables and compilation scripts for ROMEO, CLEAR-SWI and MCPC-3D-S
Author korbinian90
Popularity
5 Stars
Updated Last
2 Months Ago
Started In
March 2020

CompileMRI - mritools

Build Status

Note for MacOS: We automatically compile for MacOS too, however, it seems to only run on the same version it was compiled on (macos-11). The MacOS executables are not signed and require the user to allow the execution of multiple files.

Compile ROMEO and CLEAR-SWI

  1. Install Julia

    Please install Julia using the binaries from this page https://julialang.org. (Julia 1.9 is recommended)

  2. Install CompileMRI

    Start Julia (Type julia in the command line or start the installed Julia executable)

    Type the following in the Julia REPL:

    julia> ] # Be sure to type the closing bracket via the keyboard
    # Enters the Julia package manager
    
    # optional: activate a local julia project in the current folder
    (@v1.7) pkg> activate . 
    
    (compile) pkg> dev https://github.com/korbinian90/CompileMRI.jl
    # All dependencies are installed automatically
    (compile) pkg> build CompileMRI
  3. Create a command line executable

    julia> using CompileMRI
    julia> compile("/tmp/compiled")

    If the folder to output the binary (here /tmp/compiled) already exists, the additional keyword argument force=true is required:

    julia> compile("/tmp/compiled"; force=true)

Update to newest version

Since I'm using unregistered packages in dev mode, it is tricky to get updates to packages. Easiest is to remove the folder user/.julia/dev/CompileMRI and start over at step 2.

Known problems

Workaround for Permission Denied Error

ERROR: SystemError: opening file "/<path>/RomeoApp/<subfolder>/Project.toml"

If the compilation fails because of missing permissions, the RomeoApp folder needs write permission. In that case, changing the permission with

chmod 777 /<path>/RomeoApp/<subfolder>

and rerunning the command with

julia> compile("/tmp/compiled"; force=true)

should work.