CorrDCA.jl

Small utility package to compute statistical observable from FASTA multiple sequence alignments.
Author pagnani
Popularity
1 Star
Updated Last
3 Months Ago
Started In
December 2020

CorrDCA

Stable Dev Build Status Coverage

Warning

DISCONTINUED in favor of DCAUtils.jl

Intro

Simple package that:

Usage

The computation of the sequence weights is typically very expensive computationaly. A considerable speed-up can be achieved by exploiting parallel computation. To do so, just start julia with the -p nprocs argument where nprocs is the number of workers available on your machine. Alternatively, from julia REPL, just do a:

julia> using Distributed; 
julia> addprocs(8) # put here the number of cores available 
julia> @everywhere using CorrDCA

Credits

All methods available here are present also in the (so far) unregistered "GaussDCA" package.

The remove_duplicate_sequences has been basically copied by it.

Required Packages

Used By Packages

No packages found.