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This package defines an instance of the AbstractFBCModel interface (from the
package
AbstractFBCModels.jl) for
models saved as MAT files (typically produced by
cobratoolbox and
RAVEN). This allows you to easily
use the MAT formatted models in constraint-based modeling packages in Julia,
and convert them to other constraint-based metabolic modeling data formats.
MAT.jl is used for the lower-level work
with MatLab data.
The primary purpose of this is to provide MAT model loading functionality for COBREXA.jl and FBCModelTests.jl, but is otherwise completely generic and can be used independently of these packages.
You should be able to load the .mat models (called MATFBCModel) via the
AbstractFBCModels interface:
import AbstractFBCModels as M
import MATFBCModels
model = M.load("my_model.mat")Documentation of AbstractFBCModels.jl provides details on the use of the loaded model.
MATFBCModels.jl was developed at the Luxembourg Centre for Systems
Biomedicine of the University of Luxembourg
(uni.lu/lcsb)
and at Institute for Quantitative and Theoretical Biology at Heinrich Heine
University Düsseldorf (qtb.hhu.de).
The development was supported by European Union's Horizon 2020 Programme under
PerMedCoE project (permedcoe.eu),
agreement no. 951773.
