File I/O routines for MIRT
Author JeffFessler
1 Star
Updated Last
2 Years Ago
Started In
July 2019



action status pkgeval status codecov.io license docs-stable docs-dev

File I/O routines for MIRT (Michigan Image Reconstruction Toolbox) in Julia

This code is isolated from the main MIRT.jl toolbox, because complete tests of these functions require large files that are not part of the repo.

The primary functions exported are for reading GE MRI kspace data:

  • loadpfile
  • read_rdb_hdr

Utility functions for reading and writing fixed-length structured headers, which are common in legacy medical imaging formats, are in src/ge-mri/header.jl, such as header_read and header_write.

Also included are utilities for reading the HDF5 formatted raw MRI kspace data in the fastMRI image reconstruction challenge.

This software was developed at the University of Michigan by Jeff Fessler and his group.

This code is a package dependency of MIRT.jl so most users will never clone this repo directly. Installing MIRT by following the instructions at https://github.com/JeffFessler/MIRT.jl will automatically include this code through the magic of Julia's package manager.

Currently tested with Julia 1.6, but may work with earlier versions too.

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