PANDA.jl

Phylogenetic ANalyses of DiversificAtion (in Julia)
Author hmorlon
Popularity
2 Stars
Updated Last
1 Month Ago
Started In
April 2020

PANDA: Phylogenetic ANalyses of DiversificAtion

Implements macroevolutionary analyses on phylogenetic trees.

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Installation

First, Julia needs to be installed on your computer. If this is not the case, you can install it by following the instructions provided on this page

Within a Julia session, you can install the package by typing

julia> using Pkg
julia> Pkg.add("PANDA")

PANDA uses R functions and packages for plotting. If you want to be able to use the plotting functions, the R language needs to be installed on your computer. You will also need a few R packages to be installed, including : ape, coda, RColorBrewer, fields. You can install them from a R session by typing

> install.packages("ape", "coda", "RColorBrewer", "fields")

You will then be able to load PANDA to Julia by typing

julia> using PANDA

Help

The help of the latest released version of the package is available using this link