sparseQFCA
sparseQFCA is a registered package for the sparse Quantitative Flux Coupling Analysis. The example data files
S.csv
and rev.csv
are extracted from the core E. coli model.
Usage
certificates, blocked, fctable = QFCA(S, rev)
Inputs
S
: the associated sparse stoichiometric matrixrev
: the boolean vector with trues corresponding to the reversible reactions
Outputs
certificates
: the fictitious metabolites for the sparse positive certificatesblocked
: the boolean vector with trues corresponding to the blocked reactionsfctable
: the resulting flux coupling matrix
Quick Start
To get started, first run import Pkg; Pkg.add("sparseQFCA")
to install the sparseQFCA package, and then see this Jupyter notebook for a demonstration on how to use it.
License
sparseQFCA is distributed under the GNU General Public License v3.0.