Sparse Quantitative Flux Coupling Analysis
Author mtefagh
1 Star
Updated Last
2 Years Ago
Started In
January 2019


Build Status Coverage Status codecov

sparseQFCA is a registered package for the sparse Quantitative Flux Coupling Analysis. The example data files S.csv and rev.csv are extracted from the core E. coli model.


certificates, blocked, fctable = QFCA(S, rev)


  • S: the associated sparse stoichiometric matrix
  • rev: the boolean vector with trues corresponding to the reversible reactions


  • certificates: the fictitious metabolites for the sparse positive certificates
  • blocked: the boolean vector with trues corresponding to the blocked reactions
  • fctable: the resulting flux coupling matrix

Quick Start

To get started, first run import Pkg; Pkg.add("sparseQFCA") to install the sparseQFCA package, and then see this Jupyter notebook for a demonstration on how to use it.


sparseQFCA is distributed under the GNU General Public License v3.0.