Wrapper around the NCBI taxonomy files

Package for modeling glycolysis activity

A thin wrapper over Bridge.jl for the SciML scientific machine learning common interface, enabling new methods for neural stochastic differential equations (neural SDEs)

Julia implementation of the Gumbel-Softmax reparametrization trick compatible with Zygote and ForwardDiff

Alpha stable and sub-Gaussian distributions in Julia

Save videos from Julia

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Non-compartmental pharmacokinetics analysis for Julia.

Image registration using mutual information.

Solver for complemetarity-based dynamics.

Quantum mechanical few body systems in Julia

Compute Bell inequalities and their quantum violations.

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Provides a general framework for implementing and performing Kernel Density Estimation

Support for out-of-core sparse arrays in Julia, backed by a HDF5 file stored on disk

Automatically differentiate sparse systems of nonlinear equations

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A julia package to implement model selection algorithms on basic regression models.

Unfortunately, FMUs (fmi-standard.org) are not differentiable by design. To enable their full potential inside Julia, FMISensitivity.jl makes FMUs fully differentiable, regarding to: states and derivatives | inputs, outputs and other observable variables | parameters | event indicators | explicit time | state change sensitivity by event

High performance hybrid Monte Carlo simulation

Extension of `Graphs.jl` to graphs with named vertices.

A toolkit for the quantum and classical Dicke model in Julia.

Differentiable acoustic ray tracers

Effective parallelism for power flow calculation

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Tests for constraint-based metabolic models

Interface and Julia implementation of exchange-correlation functionals

Highly flexible and efficient computation of n-dimensional binned statistic(s) for n-variable(s)

Solutions for combinatorial problems using symbolic methods.

A companion package for Microbiome.jl for working with the Biobakery family of computational tools

Anytime error minimization search for POMDPs, implemented in Julia.

BitArray representation of genetic sequences in Julia

Package for fitting models according to the deep compartment modeling framework for pharmacometric applications.

BioCCP.jl exploits the Coupon Collector Problem for sample size determination in combinatorial biotechnology.

Geometry optimization for molecular simulation

Jet operator pack for seismic modeling dependent on WaveFD.jl. Part of the COFII framework.

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Extension of PowerSimulations.jl to model Hydropower devices

Framework to create your own genetic algorithm with multi-threading.