A Julia package for real-time audification of ODEs and SDEs

This Julia package performs the numerical integration of two Approximated Master Equations on networks: the Cavity Master Equation and the Conditional Dynamic Approximation

Simple predictive models for tumor growth, and tools to apply them to clinical data

Ecosystem of numerical methods for microbial kinetics data analysis, from preprocessing to result interpretation.

Algorithms for the transport of mass and energy in the environment

This package simplifies evolutionary algorithms for applications in systems biology. It can be used to generate oscillating reaction networks, networks that match input timeseries data, or fit parameters (rateconstants).

Julia implementation of joint models combining longitudinal and survival endpoints

A Julia package to import Vensim .xmile files as ModelingToolkit.jl models.

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Julia package to facilitate the construction of JumpProblems on graphs.

Model associated to Elife paper Rodrigues et al. 2023

High level functions for analyzing the output of simulations

Create parameter estimation problems for ODE models

A Julia package for building, and running Biochemical Systems Theory (BST) models

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ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.

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A powerful, no code solution for control and systems engineering

Dynamical systems identification

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A julia package for the simulation of stirred tank reactor with surface, gasphase or user defined chemistry models

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A package for simulating batch reactor model with gasphase chemistry, surface chemistry or user defined chemistry

This package models the dynamics of a biofilm using the Julia programming language.

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A package for the calculation of steady state coverages for a given gas composition, T and p

This package is a part of RSim, however, may also be used as an independent package for the calculation of source terms from an xml mechanism input file

A dynamically-structured matrix population model

A Julia package that implements a category of reaction (transportation) network-type dynamical systems.

Computing solutions to the frequency-domain radial Teukolsky equation with the Generalized Sasaki-Nakamura (GSN) formalism in julia

General Relativistic Orbital Dynamics in Julia

Functions to run the SBML Test Suite with SBMLToolkit, create logs and create reports for the SBML Test Suite Database

Numerical Methods for Vlasov-Poisson and Vlasov-Maxwell Systems

A Julia package for simulating the dynamics of passively crosslinked actin rings.

:spider: Non-Markovian stochastic SPIn (and harmonic oscillator) DYnamics.

Integrating Neural Ordinary Differential Equations, the Method of Lines, and Graph Neural Networks

Simulators for kite power systems

A tool to solve optimal control problem

Package for fitting models according to the deep compartment modeling framework for pharmacometric applications.