NBInclude is a package for the Julia language which allows you to include and execute IJulia (Julia-language Jupyter) notebook files just as you would include an ordinary Julia file. That is, analogous to doing
include("myfile.jl") in Julia to execute
myfile.jl, you can do
using NBInclude @nbinclude("myfile.ipynb")
to execute all of the code cells in the IJulia notebook
myfile.ipynb. Similar to
include, the value of the last evaluated expression in the last evaluated code cell is returned.
The goal of this package is to make notebook files just as easy to incorporate into Julia programs as ordinary Julia (
.jl) files, giving you the advantages of a notebook (integrated code, formatted text, equations, graphics, and other results) while retaining the modularity and re-usability of
Note: Scoping rules differ between interactive (IJulia, REPL) and non-interactive Julia code. Running a notebook as
@nbinclude("foo.ipynb"; softscope=true) will load notebooks using "soft" global scoping similar to interactive (REPL) code in Julia 1.5+ or for IJulia with any Julia version. That flag's default value,
false, will load notebooks with the "hard" scoping rule that Julia uses for non-interactive code (e.g. in
include); see also the SoftGlobalScope package for more details.
Key features of NBInclude are:
- The path of the notebook is relative to the path of the current file (if any),
and nested inclusions can use paths relative to the notebook, just as for
- In a module, included notebooks work fine with precompilation in Julia (and re-compilation is automatically triggered if the notebook changes).
- Code is associated with accurate line numbers (e.g. for backtraces when exceptions are thrown), in the form of
Min input cell
myfile.ipynbnotebook. Un-numbered cells (e.g. unevaluated cells) are given a number
N-th nonempty cell in the notebook. You can use
@nbinclude("myfile.ipynb", renumber=true)to automatically renumber the cells in sequence (as if you had selected Run All from the Jupyter Cell menu), without altering the file.
- The Julia
/path/to/myfile.ipynb:In[N]for input cell
- In IJulia, cells beginning with
?are interpreted as shell commands or help requests, respectively. Such cells are ignored by
regexkeywords can be used to include a subset of notebook cells to those for which
counter ∈ countersand the cell text matches
regex. For example,
@nbinclude("notebook.ipynb"; counters=1:10, regex=r"#\s*EXECUTE")would include cells 1 to 10 from
notebook.ipynbthat contain comments like
- A keyword
anshookcan be used to run a passed function on the return value of all the cells.
- No Python or Jupyter dependency.
softscopeflag mentioned above.
To install it, simply do
Pkg.add("NBInclude") as usual for Julia packages.