PubMedMiner.jl
NOTE: This package is in a state of flux and currently just supports the PubMed Miner Web App - DO NOT USE
This package provides a set of tools and examples to study co-occurrences/comorbidities in PubMed/Medline articles based on MeSH descriptors and UMLS concepts
Installation
Pkg.clone("https://github.com/bcbi/PubMedMiner.jl.git")
Dependencies
PubMedMiner depends on MySQL.jl and DataFrames.jl which should be installed automatially by the package manager when clonning this reposity (via Julia). However, many of the examples provided have additional dependencies that will be described accordingly.