TIFFDatasets.jl

Read TIFF datasets with a similar API than NetCDF files
Author Alexander-Barth
Popularity
5 Stars
Updated Last
7 Months Ago
Started In
March 2023

Build Status codecov.io documentation dev

TIFFDatasets

This package implements the CommonDataModel.jl interface for TIFF files, which means that the datasets can be accessed in the same way as netCDF files opened with NCDatasets.jl or GRIB files opened with GRIBDatasets. For GeoTIFF files the project information will be available as additional variables following the CF Conventions.

using TIFFDatasets
using Downloads: download
fname = download("https://data-assimilation.net/upload/Alex/TIFF/S2_1-12-19_48MYU_0.tif")
ds = TIFFDataset(fname)

Output:

Dataset: /tmp/jl_4LSVOjATCR
Group: /

Dimensions
   cols = 256
   rows = 256

Variables
  lon   (256 × 256)
    Datatype:    Float64
    Dimensions:  cols × rows
    Attributes:
     standard_name        = longitude
     units                = degrees_east

  lat   (256 × 256)
    Datatype:    Float64
    Dimensions:  cols × rows
    Attributes:
     standard_name        = latitude
     units                = degrees_north

  x   (256)
    Datatype:    Float64
    Dimensions:  cols
    Attributes:
     standard_name        = projection_x_coordinate
     units                = m

  y   (256)
    Datatype:    Float64
    Dimensions:  rows
    Attributes:
     standard_name        = projection_y_coordinate
     units                = m

  crs
    Attributes:
     grid_mapping_name    = transverse_mercator
     longitude_of_central_meridian = 105.0
     false_easting        = 500000.0
     false_northing       = 1.0e7
     latitude_of_projection_origin = 0.0
     scale_factor_at_central_meridian = 0.9996
     longitude_of_prime_meridian = 0.0
     semi_major_axis      = 6.378137e6
     inverse_flattening   = 298.257223563
     crs_wkt              = PROJCS["WGS 84 / UTM zone 48S",GEOGCS["WGS 84",DATUM["WGS_1984",SPHEROID["WGS 84",6378137,298.257223563,AUTHORITY["EPSG","7030"]],AUTHORITY["EPSG","6326"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4326"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",105],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","32748"]]
     GeoTransform         = 706740.0 10.0 0.0 9.34096e6 0.0 -10.0

  band1   (256 × 256)
    Datatype:    Float32
    Dimensions:  cols × rows
    Attributes:
     grid_mapping         = crs

[...]

The dataset ds will also have the virtual variables x, y, lon and lat (unless there is no projection defined in the GeoTiff file) representing the projected coordinates and the corresponding longitude and latitude. The projection information as the so-called Well Known Text is available as attribute crs_wkt of the virtural variable crs following the CF Conventions.

For example, the first band and the corresponding lon/lat coordinates can be loaded with using the API of CommonDataModel.jl:

data = ds["band1"][:,:];
lon = ds["lon"][:,:];
lat = ds["lat"][:,:];
# See
# https://cfconventions.org/cf-conventions/cf-conventions.html#appendix-grid-mappings
grid_mapping_name = ds["crs"].attrib["grid_mapping_name"]

Using all bands as single 3D array can be done using catbands = true, for example:

ds = TIFFDataset(fname,catbands = true)
size(ds["band"]);
# outputs (265, 265, 11) as there are 11 bands
data_all_bands = ds["band"][:,:,:];

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