Dependency Packages
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ReactionNetworkEvolution.jl1This package simplifies evolutionary algorithms for applications in systems biology. It can be used to generate oscillating reaction networks, networks that match input timeseries data, or fit parameters (rateconstants).
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ReducedBasisMethods.jl1Reduced Basis Methods for Particle Systems
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SynapseElife.jl1Model associated to Elife paper Rodrigues et al. 2023
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TKTDsimulations.jl0Julia simulation package for TKTD models
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TumorGrowth.jl0Simple predictive models for tumor growth, and tools to apply them to clinical data
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SurfaceReactions.jl0This package is a part of RSim, however, may also be used as an independent package for the calculation of source terms from an xml mechanism input file
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SurfaceCoverage.jl0A package for the calculation of steady state coverages for a given gas composition, T and p
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ReactionSensitivity.jl0-
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IntegratedOscillatorModel.jl0-
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IndirectTrajOpt.jl0-
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EnvironmentalTransport.jl0Algorithms for the transport of mass and energy in the environment
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