Biology Packages
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FastaIO.jl10Utilities to read/write FASTA format files in Julia
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StatGenData.jl1Statistical analysis of genomic data
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Pagel.jl2Detect correlated evolution on phylogenies
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SpikeSorter.jl7Spike sorting tools written in Julia, which may be of use to experimental neuroscientists
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Bio.jl258[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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BrainWave.jl9Julia functions to process electroencephalographic (EEG) recordings
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OBC.jl0Optimal Bayesian classification for RNA-Seq data
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Gillespie.jl60Stochastic Gillespie-type simulations using Julia
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IntervalTrees.jl40A data structure for efficient manipulation of sets of intervals
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ROC.jl16Receiver Operating Characteristic (ROC) Curve for Julia Language
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Iceberg.jl1Ice-seawater interface calculations using level set methods
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NeuroAnalysis.jl11Neural Signal Analysis
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GenomeAnnotations.jl1Manage Local Genome Annotation files
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YARS.jl0YARS communication for julia
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PhyloNetworks.jl133A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
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Diversity.jl26Julia package for diversity measurement
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DCEMRI.jl34DCE MRI analysis in Julia
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ProgressiveAligner.jl7Progressive alignment scripts for protein sequences
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EcologicalNetworks.jl66Everything you've never dreamed about measuring on ecological networks.
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EcologicalNetwork.jl66Everything you've never dreamed about measuring on ecological networks.
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HyperNEAT.jl2HyperNEAT
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GenomicTiles.jl0-
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BioFeatures.jl0-
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XSim.jl9Simulate sequence data and complicated pedigree structures
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FishABM.jl3An agent based life cycle model for managed fisheries
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PseudoGenomes.jl0-
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BismarkSummary.jl0-
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SkullSegment.jl3Macaque brain and skull extraction tools (WIP)
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LeafAreaIndex.jl8Package to calculate Leaf Area Index from Hemisperical Images.
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JWAS.jl78Julia for Whole-genome Analysis Software
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Pathogen.jl68Simulation, visualization, and inference of individual level infectious disease models with Julia
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NEAT.jl26Julia implemention of NEAT (NeuroEvolution of Augmenting Topologies) algorithm
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PureSeq.jl1Code for the Pure-seq project
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Rosalind.jl0A bioinformatics library for solving problems from rosalind.info.
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VarianceComponentTest.jl4Exact Variance Component Test for GWAS
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Ensemble.jl2Ensemble Samplers for Julia
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MIToS.jl63Mutual Information Tools for protein Sequence analysis in Julia
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LCS.jl7A Julia package for finding longest common and longest contiguous subsequences
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TimeTrees.jl5Phylogenetic tree type for julia
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AlignmentStatistics.jl2-
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