Biology Packages
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FastaIO.jl16Utilities to read/write FASTA format files in Julia
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StatGenData.jl1Statistical analysis of genomic data
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Pagel.jl2Detect correlated evolution on phylogenies
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SpikeSorter.jl7Spike sorting tools written in Julia, which may be of use to experimental neuroscientists
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Bio.jl261[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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BrainWave.jl9Julia functions to process electroencephalographic (EEG) recordings
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OBC.jl0Optimal Bayesian classification for RNA-Seq data
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Gillespie.jl60Stochastic Gillespie-type simulations using Julia
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IntervalTrees.jl44A data structure for efficient manipulation of sets of intervals
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ROC.jl17Receiver Operating Characteristic (ROC) Curve for Julia Language
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Iceberg.jl1Ice-seawater interface calculations using level set methods
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NeuroAnalysis.jl12Neural Signal Analysis
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GenomeAnnotations.jl1Manage Local Genome Annotation files
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YARS.jl0YARS communication for julia
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PhyloNetworks.jl155A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
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Diversity.jl34Julia package for diversity measurement
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DCEMRI.jl37DCE MRI analysis in Julia
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ProgressiveAligner.jl8Progressive alignment scripts for protein sequences
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EcologicalNetworks.jl68Everything you've never dreamed about measuring on ecological networks.
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EcologicalNetwork.jl68Everything you've never dreamed about measuring on ecological networks.
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HyperNEAT.jl1HyperNEAT
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GenomicTiles.jl0-
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BioFeatures.jl0-
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XSim.jl11Simulate sequence data and complicated pedigree structures
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FishABM.jl3An agent based life cycle model for managed fisheries
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PseudoGenomes.jl0-
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BismarkSummary.jl0-
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SkullSegment.jl3Macaque brain and skull extraction tools (WIP)
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LeafAreaIndex.jl10Package to calculate Leaf Area Index from Hemisperical Images.
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JWAS.jl96Julia for Whole-genome Analysis Software
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Pathogen.jl72Simulation, visualization, and inference of individual level infectious disease models with Julia
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NEAT.jl24Julia implemention of NEAT (NeuroEvolution of Augmenting Topologies) algorithm
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PureSeq.jl1Code for the Pure-seq project
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Rosalind.jl1A bioinformatics library for solving problems from rosalind.info.
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VarianceComponentTest.jl4Exact Variance Component Test for GWAS
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Ensemble.jl4Ensemble Samplers for Julia
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MIToS.jl74A Julia package to analyze protein sequences, structures, and evolutionary information
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LCS.jl7A Julia package for finding longest common and longest contiguous subsequences
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TimeTrees.jl5Phylogenetic tree type for julia
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AlignmentStatistics.jl2-
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