Biology Packages
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PhyloNetworks.jl69A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
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GenomeGraphs.jl29A modern genomics framework for julia
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MerCounting.jl2K-mer counting algorithms and count-data utilities for the BioJulia framework
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NeuroAnalysis.jl5Neural Signal Analysis
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PumasTutorials.jl13Tutorials for pharmaceutical modeling and simulation with Pumas.jl
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JWAS.jl32Julia for Whole-genome Analysis Software
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Circuitscape.jl28Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
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PumasPlots.jl1Plotting utilities for Pumas.jl
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Bio.jl255[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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BioMedQuery.jl13Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)
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SpatialEcology.jl31Julia framework for spatial ecology - data types and utilities
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MMTF.jl6A julia package to parse and write MMTF file
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PumasDocs.jl10Documentation for Pumas: Pharmaceutical Modeling and Simulation in Julia
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MIToS.jl32Mutual Information Tools for protein Sequence analysis in Julia
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Pathogen.jl50Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia
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EcologicalNetwork.jl47Everything you've never dreamed about measuring on ecological networks.
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LeafAreaIndex.jl6Package to calculate Leaf Area Index from Hemisperical Images.
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IntervalTrees.jl23A data structure for efficient manipulation of sets of intervals
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BioAlignments.jl21Sequence alignment tools
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OrbitTomography.jl0-
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DataInterpolations.jl19A library of data interpolation and smoothing functions
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NormalizeQuantiles.jl5NormalizeQuantiles.jl implements quantile normalization
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NEAT.jl17Julia implemention of NEAT (NeuroEvolution of Augmenting Topologies) algorithm
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EEG.jl20Process EEG files in Julia
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PhyloTrees.jl7Phylogenetic trees in Julia
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GBIF.jl11Functions and types to access GBIF data from Julia
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Gillespie.jl37Stochastic Gillespie-type simulations using Julia
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XSim.jl6Simulate sequence data and complicated pedigree structures
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SpeedDate.jl3Estimation of coalescence times between sequences.
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CellFishing.jl32Fast and scalable cell search tool
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Diversity.jl14Julia package for diversity measurement
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SnpArrays.jl15Compressed storage for SNP data
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OpenGene.jl59(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
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COBRA.jl40High-level, high-performance, constraint-based reconstruction and analysis in Julia
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DCEMRI.jl23DCE MRI analysis in Julia
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TimeTrees.jl2Phylogenetic tree type for julia
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BioServices.jl10Julia interface to APIs for various bio-related web services
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SkullSegment.jl2Macaque brain and skull extraction tools (WIP)
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FastaIO.jl9Utilities to read/write FASTA format files in Julia
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ROC.jl8Receiver Operating Characteristic (ROC) Curve for Julia Language
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