For analysis of microbiome and microbial community data
Author BioJulia
26 Stars
Updated Last
2 Years Ago
Started In
August 2017

Microbiome.jl logo

Latest Release

Latest Release Docs stable License Project Status: Active – The project has reached a stable, usable state and is being actively developed.

Development Status

BioJulia maintainer: kescobo Docs dev CI codecov


Microbiome.jl is a package for manipulating and analyzing microbiome and microbial community data.


Install Microbiome from the Julia REPL:

julia> using Pkg

julia> pkg"add Microbiome"

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

julia> pkg"add Microbiome#master"

Companion Packages

  • You might also be interested in some functionality provided by BiobakeryUtils.jl.
  • Microbiome.jl uses EcoBase under the hood for many of its types and methods.
  • Microbiome.jl has a Tables.jl interface, so you can convert CommunityProfiles to any Tables.jl-compatible sink.
    • CommunityProfile is not yet a sink itself