Microbiome.jl is a package for manipulating and analyzing microbiome and microbial community data.

To use the latest version of Microbiome.jl, you must be on julia v1.6 or greater.

Install Microbiome.jl from the Julia REPL:

julia> using Pkg

julia> pkg"add Microbiome"

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

julia> pkg"add Microbiome#main"

• You might also be interested in some functionality provided by BiobakeryUtils.jl.
• Microbiome.jl uses EcoBase under the hood for many of its types and methods.
• Microbiome.jl has a Tables.jl interface, so you can convert CommunityProfiles to any Tables.jl-compatible sink.
  • CommunityProfile is not yet a sink itself