Biology Packages
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Bio.jl256[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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PhyloNetworks.jl94A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
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Circuitscape.jl70Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
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Pathogen.jl59Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia
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OpenGene.jl58(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
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EcologicalNetwork.jl57Everything you've never dreamed about measuring on ecological networks.
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Gillespie.jl53Stochastic Gillespie-type simulations using Julia
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DataInterpolations.jl47A library of data interpolation and smoothing functions
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COBRA.jl46High-level, high-performance, constraint-based reconstruction and analysis in Julia
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JWAS.jl44Julia for Whole-genome Analysis Software
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GenomeGraphs.jl42A modern genomics framework for julia
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MIToS.jl39Mutual Information Tools for protein Sequence analysis in Julia
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SpatialEcology.jl38Julia framework for spatial ecology - data types and utilities
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CellFishing.jl36Fast and scalable cell search tool
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BioAlignments.jl34Sequence alignment tools
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PumasTutorials.jl33Tutorials for pharmaceutical modeling and simulation with Pumas.jl
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SnpArrays.jl26Compressed storage for SNP data
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IntervalTrees.jl26A data structure for efficient manipulation of sets of intervals
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DCEMRI.jl26DCE MRI analysis in Julia
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FusionDirect.jl25(No maintenance) Detect gene fusion directly from raw fastq files
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EEG.jl24Process EEG files in Julia
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BioSeq.jl24Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences
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NEAT.jl22Julia implemention of NEAT (NeuroEvolution of Augmenting Topologies) algorithm
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Diversity.jl18Julia package for diversity measurement
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BioMedQuery.jl16Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)
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BioServices.jl14Julia interface to APIs for various bio-related web services
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GBIF.jl13Functions and types to access GBIF data from Julia
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ROC.jl12Receiver Operating Characteristic (ROC) Curve for Julia Language
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PhyloTrees.jl12Phylogenetic trees in Julia
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FastaIO.jl10Utilities to read/write FASTA format files in Julia
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Crispulator.jl10Pooled CRISPR screen optimization tool
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ProgressiveAligner.jl7Progressive alignment scripts for protein sequences
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MerCounting.jl7K-mer counting algorithms and count-data utilities for the BioJulia framework
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LCS.jl7A Julia package for finding longest common and longest contiguous subsequences
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MMTF.jl7A julia package to parse and write MMTF file
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SpikeSorter.jl7Spike sorting tools written in Julia, which may be of use to experimental neuroscientists
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NormalizeQuantiles.jl6NormalizeQuantiles.jl implements quantile normalization
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BrainWave.jl6Julia functions to process electroencephalographic (EEG) recordings
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LeafAreaIndex.jl6Package to calculate Leaf Area Index from Hemisperical Images.
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XSim.jl6Simulate sequence data and complicated pedigree structures
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