A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Stochastic Gillespie-type simulations using Julia

A modern genomics framework for julia

Sequence alignment tools

A data structure for efficient manipulation of sets of intervals

(No maintenance) Detect gene fusion directly from raw fastq files

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

Phylogenetic trees in Julia

Utilities to read/write FASTA format files in Julia

A Julia package for finding longest common and longest contiguous subsequences

K-mer counting algorithms and count-data utilities for the BioJulia framework

Progressive alignment scripts for protein sequences

Simulate sequence data and complicated pedigree structures

Estimation of coalescence times between sequences.

Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.

Phylogenetic tree type for julia

HyperNEAT

Ensemble Samplers for Julia

Detect correlated evolution on phylogenies

-

Code for the Pure-seq project

Manage Local Genome Annotation files

-

-

Optimal Bayesian classification for RNA-Seq data

-

-

-

YARS communication for julia