A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia

Stochastic Gillespie-type simulations using Julia

A modern genomics framework for julia

A data structure for efficient manipulation of sets of intervals

(No maintenance) Detect gene fusion directly from raw fastq files

Sequence alignment tools

Utilities to read/write FASTA format files in Julia

Phylogenetic trees in Julia

Progressive alignment scripts for protein sequences

Simulate sequence data and complicated pedigree structures

A Julia package for finding longest common and longest contiguous subsequences

Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.

Estimation of coalescence times between sequences.

K-mer counting algorithms and count-data utilities for the BioJulia framework

Ensemble Samplers for Julia

HyperNEAT

Detect correlated evolution on phylogenies

Phylogenetic tree type for julia

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Manage Local Genome Annotation files

Code for the Pure-seq project

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YARS communication for julia

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Optimal Bayesian classification for RNA-Seq data

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