MerCounting.jl

K-mer counting algorithms and count-data utilities for the BioJulia framework
Popularity
7 Stars
Updated Last
6 Months Ago
Started In
March 2020

KmerAnalysis

Latest release MIT license Stable documentation Pkg Status Chat

Description

A k-mer counting and analysis tool-box for Julia.

Provides k-mer counting utilities, as well as k-mer spectra and coverage analysis routines.

Installation

You can install KmerAnalysis from the julia REPL. Press ] to enter pkg mode again, and enter the following:

pkg> add KmerAnalysis

To add it to your environment.

You may also want the add-on package KmerAnalysisMakie.jl, which provides AbstractPlotting recipes for the types in this package.

Testing

KmerAnalysis is tested against Julia 1.X on Linux, OS X, and Windows.

Latest build status:

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

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backers

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Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on Gitter, or you can try the Bio category of the Julia discourse site.