41 Packages since 2013
User Packages
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Bio.jl256[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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Automa.jl116A julia code generator for regular expressions
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BioSequences.jl82Biological sequences for the julia language
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BioStructures.jl43A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
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GenomeGraphs.jl42A modern genomics framework for julia
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BioAlignments.jl34Sequence alignment tools
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FASTX.jl28Parse and process FASTA and FASTQ formatted files of biological sequences.
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IntervalTrees.jl26A data structure for efficient manipulation of sets of intervals
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Microbiome.jl26For analysis of microbiome and microbial community data
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GeneticVariation.jl25Datastructures and algorithms for working with genetic variation
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BioCore.jl22Core types and interfaces for BioJulia packages
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GenomicFeatures.jl22Tools for genomic features in Julia.
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Libz.jl22Fast, flexible zlib bindings.
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BufferedStreams.jl21Fast composable IO streams
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BioSymbols.jl16Nucleic and amino acid primitive types
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BioServices.jl14Julia interface to APIs for various bio-related web services
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SubstitutionModels.jl12Biological Sequence Substitution Models for Julia
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IndexableBitVectors.jl11Fully indexable dictionaries - access/rank/select operations
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BGZFStreams.jl11BGZF Stream
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XAM.jl10Parse and process SAM and BAM formatted files
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BioTools.jl10Interfaces to common external biological tools from julia scripts and programs
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Codecs.jl10Common data encoding algorithms
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PopGen.jl10Population Genetics in Julia
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KmerAnalysis.jl7K-mer counting algorithms and count-data utilities for the BioJulia framework
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MMTF.jl7A julia package to parse and write MMTF file
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MerCounting.jl7K-mer counting algorithms and count-data utilities for the BioJulia framework
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PopGen_archive.jl7Population Genetics functions in Julia.
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BioGenerics.jl6Generic methods, types and modules for the BioJulia ecosystem.
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ReadDatastores.jl6Datastores for reads, not your papa's FASTQ files.
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TwoBit.jl6Support for working with 2Bit formatted sequence data files
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GFF3.jl4-
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FormatSpecimens.jl4Biological file format specimens for testing packages, and functions to assist in testing.
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GenomicAnnotations.jl4-
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MicrobiomePlots.jl3-
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BigBed.jl3-
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BED.jl3-
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BigWig.jl2-
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BiobakeryUtils.jl2A companion package for Microbiome.jl for working with the Biobakery family of computational tools
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KmerAnalysisMakie.jl2Makie recpies for visualising KmerAnalysis types and results.
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BBI.jl2-
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