42 Packages since 2013
User Packages
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Bio.jl258[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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Automa.jl161A julia code generator for regular expressions
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BioSequences.jl130Biological sequences for the julia language
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BioStructures.jl72A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
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GenomeGraphs.jl59A modern genomics framework for julia
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BioAlignments.jl56Sequence alignment tools
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FASTX.jl43Parse and process FASTA and FASTQ formatted files of biological sequences.
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IntervalTrees.jl40A data structure for efficient manipulation of sets of intervals
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PopGen.jl37Population Genetics in Julia
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GeneticVariation.jl34Datastructures and algorithms for working with genetic variation
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BioCore.jl29Core types and interfaces for BioJulia packages
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Libz.jl27Fast, flexible zlib bindings.
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BioSymbols.jl27Nucleic and amino acid primitive types
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GenomicFeatures.jl27Tools for genomic features in Julia.
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XAM.jl22Parse and process SAM and BAM formatted files
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BioServices.jl19Julia interface to APIs for various bio-related web services
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Kmers.jl17In development: Kmer types and methods for julia
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SubstitutionModels.jl16Biological Sequence Substitution Models for Julia
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BioTools.jl13Interfaces to common external biological tools from julia scripts and programs
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IndexableBitVectors.jl12Fully indexable dictionaries - access/rank/select operations
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BGZFStreams.jl12BGZF Stream
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KmerAnalysis.jl10K-mer counting algorithms and count-data utilities for the BioJulia framework
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BioGenerics.jl10Generic methods, types and modules for the BioJulia ecosystem.
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Codecs.jl10Common data encoding algorithms
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MerCounting.jl10K-mer counting algorithms and count-data utilities for the BioJulia framework
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WaveletMatrices.jl10The Wavelet Matrix
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ReadDatastores.jl9Datastores for reads, not your papa's FASTQ files.
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BioFetch.jl9Easily fetch biological sequences from online sources
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FormatSpecimens.jl9Biological file format specimens for testing packages, and functions to assist in testing.
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TwoBit.jl8Support for working with 2Bit formatted sequence data files
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GenomicAnnotations.jl8-
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SequenceVariation.jl8Biological sequence variation
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MMTF.jl7A julia package to parse and write MMTF file
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GFF3.jl7-
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BED.jl5-
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PopGenCore.jl4Core utilities for PopGen.jl, including the PopData type and file IO
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BigBed.jl3-
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MicrobiomePlots.jl3-
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Indexes.jl2-
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BigWig.jl2-
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