[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A julia code generator for regular expressions

Biological sequences for the julia language

A Julia package to read, write and manipulate macromolecular structures

A modern genomics framework for julia

Parse and process FASTA and FASTQ formatted files of biological sequences.

Sequence alignment tools

Plotting and interface tools for biology.

Population Genetics in Julia

A data structure for efficient manipulation of sets of intervals

Datastructures and algorithms for working with genetic variation

Tools for genomic features in Julia.

Nucleic and amino acid primitive types

Core types and interfaces for BioJulia packages

Parse and process SAM and BAM formatted files

Fast, flexible zlib bindings.

Julia interface to APIs for various bio-related web services

In development: Kmer types and methods for julia

Simple, low-level views into memory in Julia

Analysis of Single Cell Expression data in Julia

Biological Sequence Substitution Models for Julia

Interfaces to common external biological tools from julia scripts and programs

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BGZF Stream

Biological file format specimens for testing packages, and functions to assist in testing.

K-mer counting algorithms and count-data utilities for the BioJulia framework

Fully indexable dictionaries - access/rank/select operations

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K-mer counting algorithms and count-data utilities for the BioJulia framework

Wrapper to protein secondary structure calculation packages

Generic methods, types and modules for the BioJulia ecosystem.

Datastores for reads, not your papa's FASTQ files.

Common data encoding algorithms

The Wavelet Matrix

Easily fetch biological sequences from online sources

Support for working with 2Bit formatted sequence data files

Biological sequence variation

A Julia package to read and write MMTF files

Core utilities for PopGen.jl, including the PopData type and file IO

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