[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A julia code generator for regular expressions

Biological sequences for the julia language

A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

A modern genomics framework for julia

Sequence alignment tools

Parse and process FASTA and FASTQ formatted files of biological sequences.

A data structure for efficient manipulation of sets of intervals

For analysis of microbiome and microbial community data

Datastructures and algorithms for working with genetic variation

Core types and interfaces for BioJulia packages

Tools for genomic features in Julia.

Fast, flexible zlib bindings.

Fast composable IO streams

Nucleic and amino acid primitive types

Julia interface to APIs for various bio-related web services

Biological Sequence Substitution Models for Julia

Fully indexable dictionaries - access/rank/select operations

BGZF Stream

Parse and process SAM and BAM formatted files

Interfaces to common external biological tools from julia scripts and programs

Common data encoding algorithms

Population Genetics in Julia

K-mer counting algorithms and count-data utilities for the BioJulia framework

A julia package to parse and write MMTF file

K-mer counting algorithms and count-data utilities for the BioJulia framework

Population Genetics functions in Julia.

Generic methods, types and modules for the BioJulia ecosystem.

Datastores for reads, not your papa's FASTQ files.

Support for working with 2Bit formatted sequence data files

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Biological file format specimens for testing packages, and functions to assist in testing.

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A companion package for Microbiome.jl for working with the Biobakery family of computational tools

Makie recpies for visualising KmerAnalysis types and results.

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