The GenomicFeatures package provides utilities for working with interval based genomic annotations. It builds on IntervalTrees to provide a data-structures and algorithms for various formats such as BED, GFF3, bigWig and bigBed.
You can install the GenomicFeatures package from the Julia REPL.
Press ] to enter pkg mode, then enter the following command:
add GenomicFeaturesIf you are interested in the cutting edge of the development, please check out the develop branch to try new features before release.
GenomicFeatures is tested against Julia 1.X on Linux, OS X, and Windows.
Latest build status:
We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.
Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.
We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.
Thank you to all our backers and sponsors!
Love our work and community? Become a backer.
Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project. Your logo will show up here with a link to your website.
If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.