BioMart.jl

Make simple requests to Ensembl BioMart database.
Author jonathanBieler
Popularity
2 Stars
Updated Last
1 Year Ago
Started In
January 2020

BioMart

Stable

Build Status Coverage Project Status: Inactive – The project has reached a stable, usable state but is no longer being actively developed; support/maintenance will be provided as time allows.

Make simple requests to Ensembl BioMart database.

Example

using BioMart
import BioMart: Dataset, Filters, Attributes

BioMart.query(
    Dataset("hsapiens_gene_ensembl"),
    Filters(
        ensembl_gene_id = "ENSG00000146648", 
        chromosome_name = "7"
    ),
    Attributes(
        "external_gene_name",
        "strand"
    ),
)

1×2 DataFrames.DataFrame
│ Row │ Gene name │ Strand │
│     │ String    │ Int64  │
├─────┼───────────┼────────┤
│ 1   │ EGFR      │ 1

Used By Packages

No packages found.