GeneticVariation.jl

Datastructures and algorithms for working with genetic variation
Popularity
40 Stars
Updated Last
3 Months Ago
Started In
June 2017

GeneticVariation

Latest Release MIT License Stable documentation Latest documentation Lifecycle

Description

GeneticVariation provides types and methods for working with datasets of genetic variation. It provides a VCF and BCF parser, as well as methods for working with variation in sequences such as evolutionary distance computation, and counting different mutation types.

Installation

Install GeneticVariation from the Julia REPL:

using Pkg
add("GeneticVariation")

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Testing

GeneticVariation is tested against julia 1.X.Y on Linux, OS X, and Windows.

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Contributing

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