Biology Packages
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MerCounting.jl2K-mer counting algorithms and count-data utilities for the BioJulia framework
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MicroscopyLabels.jl1Easily embed annotations in your microscopy images
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PumasPlots.jl1Plotting utilities for Pumas.jl
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GenomeGraphs.jl29A modern genomics framework for julia
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MindResearchRepository.jl2Access data sets from the Mind Research Repository
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PumasDocs.jl10Documentation for Pumas: Pharmaceutical Modeling and Simulation in Julia
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PumasTutorials.jl13Tutorials for pharmaceutical modeling and simulation with Pumas.jl
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DataInterpolations.jl19A library of data interpolation and smoothing functions
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CellFishing.jl32Fast and scalable cell search tool
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OrbitTomography.jl0-
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MMTF.jl6A julia package to parse and write MMTF file
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GBIF.jl11Functions and types to access GBIF data from Julia
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BioAlignments.jl21Sequence alignment tools
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BioServices.jl10Julia interface to APIs for various bio-related web services
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Circuitscape.jl28Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
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BioArgParse.jl3Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.
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OpenEphysLoader.jl5A set of tools to load data written by the OpenEphys GUI
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EvoDuplexes.jl0A Julia package to fold all local and long-range RNA duplexes.
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COBRA.jl40High-level, high-performance, constraint-based reconstruction and analysis in Julia
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SpeedDate.jl3Estimation of coalescence times between sequences.
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MendelBase.jl5MendelBase contains the base functions of OpenMendel.
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SpatialEcology.jl31Julia framework for spatial ecology - data types and utilities
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BioMedQuery.jl13Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)
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SnpArrays.jl15Compressed storage for SNP data
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Crispulator.jl10Pooled CRISPR screen optimization tool
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PhyloTrees.jl7Phylogenetic trees in Julia
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EEG.jl20Process EEG files in Julia
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VariantCall.jl1-
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NormalizeQuantiles.jl5NormalizeQuantiles.jl implements quantile normalization
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EMIRT.jl1Electronic Microscopy Image Reconstruction Toolbox using julia language
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FusionDirect.jl23(No maintenance) Detect gene fusion directly from raw fastq files
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OpenGene.jl59(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
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COSMIC.jl0-
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AlignmentStatistics.jl2-
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TimeTrees.jl2Phylogenetic tree type for julia
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LCS.jl6A Julia package for finding longest common and longest contiguous subsequences
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MIToS.jl32Mutual Information Tools for protein Sequence analysis in Julia
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Ensemble.jl2Ensemble Samplers for Julia
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VarianceComponentTest.jl4Exact Variance Component Test for GWAS
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Rosalind.jl0A bioinformatics library for solving problems from rosalind.info.
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