Pedigree functions implemented in Julia

🧬High-performance genetics-related data visualization using Makie.jl

[DEPRECATED] I deleted this repo a while ago. Forked backup from https://github.com/UnofficialJuliaMirror/Bioinformatics.jl-c429c406-9079-5a14-8339-dedc8835de90.

Choo-choo

A lightweight and powerful Julia package for computational pipelines and workflows.

CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.

A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

K-mer counting algorithms and count-data utilities for the BioJulia framework

User interface tools for bioinformatics.

Easily embed annotations in your microscopy images

Population Genetics in Julia

A modern genomics framework for julia

Access data sets from the Mind Research Repository

Parse and process FASTA and FASTQ formatted files of biological sequences.

Implementation of normalising flows and constrained random variable transformations

A library of data interpolation and smoothing functions

Fast and scalable cell search tool

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Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

A julia package to parse and write MMTF file

A unified framework for skeletonization, morphological analysis, and connectivity analysis.

For analysis of microbiome and microbial community data

A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

Functions and types to access GBIF data from Julia

Sequence alignment tools

Datastructures and algorithms for working with genetic variation

Biological sequences for the julia language

Methods for inferring undirected networks from data

Julia interface to APIs for various bio-related web services

Inference of microbial interaction networks from large-scale heterogeneous abundance data

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software

Algorithms from circuit theory to predict connectivity in heterogeneous landscapes

Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.

A set of tools to load data written by the OpenEphys GUI

A Julia package to fold all local and long-range RNA duplexes.

High-level, high-performance, constraint-based reconstruction and analysis in Julia

Estimation of coalescence times between sequences.

MendelBase contains the base functions of OpenMendel.

Julia framework for spatial ecology - data types and utilities