Biology Packages
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Pipelines.jl4A lightweight Julia package for computational pipelines and workflows.
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MerCounting.jl7K-mer counting algorithms and count-data utilities for the BioJulia framework
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MicroscopyLabels.jl3Easily embed annotations in your microscopy images
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GenomeGraphs.jl42A modern genomics framework for julia
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MindResearchRepository.jl2Access data sets from the Mind Research Repository
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PumasTutorials.jl33Tutorials for pharmaceutical modeling and simulation with Pumas.jl
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DataInterpolations.jl47A library of data interpolation and smoothing functions
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CellFishing.jl36Fast and scalable cell search tool
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OrbitTomography.jl1-
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MMTF.jl7A julia package to parse and write MMTF file
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GBIF.jl13Functions and types to access GBIF data from Julia
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BioAlignments.jl34Sequence alignment tools
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BioServices.jl14Julia interface to APIs for various bio-related web services
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Circuitscape.jl70Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
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BioArgParse.jl3Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.
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OpenEphysLoader.jl5A set of tools to load data written by the OpenEphys GUI
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EvoDuplexes.jl2A Julia package to fold all local and long-range RNA duplexes.
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COBRA.jl46High-level, high-performance, constraint-based reconstruction and analysis in Julia
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SpeedDate.jl3Estimation of coalescence times between sequences.
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MendelBase.jl5MendelBase contains the base functions of OpenMendel.
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SpatialEcology.jl38Julia framework for spatial ecology - data types and utilities
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BioMedQuery.jl16Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)
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SnpArrays.jl26Compressed storage for SNP data
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Crispulator.jl10Pooled CRISPR screen optimization tool
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PhyloTrees.jl12Phylogenetic trees in Julia
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EEG.jl24Process EEG files in Julia
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VariantCall.jl1-
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NormalizeQuantiles.jl6NormalizeQuantiles.jl implements quantile normalization
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EMIRT.jl2Electronic Microscopy Image Reconstruction Toolbox using julia language
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FusionDirect.jl25(No maintenance) Detect gene fusion directly from raw fastq files
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OpenGene.jl58(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
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COSMIC.jl0-
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AlignmentStatistics.jl2-
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TimeTrees.jl3Phylogenetic tree type for julia
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LCS.jl7A Julia package for finding longest common and longest contiguous subsequences
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MIToS.jl39Mutual Information Tools for protein Sequence analysis in Julia
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Ensemble.jl2Ensemble Samplers for Julia
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VarianceComponentTest.jl4Exact Variance Component Test for GWAS
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Rosalind.jl0A bioinformatics library for solving problems from rosalind.info.
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PureSeq.jl1Code for the Pure-seq project
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