Biology Packages
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Pedigree.jl0Pedigree functions implemented in Julia
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GeneticsMakie.jl57🧬High-performance genetics-related data visualization using Makie.jl
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Bioinformatics.jl0[DEPRECATED] I deleted this repo a while ago. Forked backup from https://github.com/UnofficialJuliaMirror/Bioinformatics.jl-c429c406-9079-5a14-8339-dedc8835de90.
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Conductor.jl47Choo-choo
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Pipelines.jl28A lightweight and powerful Julia package for computational pipelines and workflows.
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CellMLToolkit.jl51CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.
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DeconvOptim.jl42A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.
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MerCounting.jl10K-mer counting algorithms and count-data utilities for the BioJulia framework
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BioMakie.jl36User interface tools for bioinformatics.
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MicroscopyLabels.jl3Easily embed annotations in your microscopy images
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PopGen.jl37Population Genetics in Julia
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GenomeGraphs.jl59A modern genomics framework for julia
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MindResearchRepository.jl3Access data sets from the Mind Research Repository
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FASTX.jl43Parse and process FASTA and FASTQ formatted files of biological sequences.
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Bijectors.jl160Implementation of normalising flows and constrained random variable transformations
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DataInterpolations.jl129A library of data interpolation and smoothing functions
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CellFishing.jl42Fast and scalable cell search tool
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OrbitTomography.jl3-
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GpABC.jl50-
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VariantVisualization.jl69Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
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MMTF.jl7A julia package to parse and write MMTF file
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RealNeuralNetworks.jl35A unified framework for skeletonization, morphological analysis, and connectivity analysis.
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Microbiome.jl42For analysis of microbiome and microbial community data
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BioStructures.jl72A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
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GBIF.jl17Functions and types to access GBIF data from Julia
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BioAlignments.jl56Sequence alignment tools
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GeneticVariation.jl34Datastructures and algorithms for working with genetic variation
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BioSequences.jl130Biological sequences for the julia language
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NetworkInference.jl40Methods for inferring undirected networks from data
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BioServices.jl19Julia interface to APIs for various bio-related web services
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FlashWeave.jl52Inference of microbial interaction networks from large-scale heterogeneous abundance data
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DiffEqBiological.jl342Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software
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Circuitscape.jl115Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
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BioArgParse.jl3Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.
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OpenEphysLoader.jl6A set of tools to load data written by the OpenEphys GUI
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EvoDuplexes.jl2A Julia package to fold all local and long-range RNA duplexes.
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COBRA.jl53High-level, high-performance, constraint-based reconstruction and analysis in Julia
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SpeedDate.jl4Estimation of coalescence times between sequences.
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MendelBase.jl5MendelBase contains the base functions of OpenMendel.
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SpatialEcology.jl54Julia framework for spatial ecology - data types and utilities
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