Bioinformatics.jl

[DEPRECATED] I deleted this repo a while ago. Forked backup from https://github.com/UnofficialJuliaMirror/Bioinformatics.jl-c429c406-9079-5a14-8339-dedc8835de90.
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2 Years Ago
Started In
August 2021

Bioinformatics.jl

GitHub release (latest by date) Build Status codecov GitHub license

Usage

Just include the Bioinformatics.jl file with

include("Bioinformatics.jl")

or install the library with

(v1.1) pkg> add "https://github.com/mrtkp9993/Bioinformatics.jl"

and you're ready to use!

Features

  • Global alignment (Needleman-Wunsch algorithm with linear gap penalty)
  • Dotplots
  • Transcription, Reverse Complement, Translation, Open reading frames (ORFs)
  • GC-content, minimum skew
  • Protein mass, Extinction coefficient, Instability index, Isoelectric point, Grand average of hydropathicity (GRAVY) statistics of protein sequences

Documentation

Please refer here.

Contribute

If you find any bugs/issues, please create an issue or fix and create a pull request.

License

GNU General Public License v3.0 © Murat Koptur

Used By Packages

No packages found.