This is a simple package to automatically download BiGG reactions and metabolites from the BiGG website. It automatically caches responses to speed up repeated requests.
You can get information about a reaction from the universal model using its ID:
rxn = get_reaction("PFL")
And you can get information about a metabolite from the universal model through its ID:
met = get_metabolite("h2o")
You can test the package with:
The cache can be source of subtle issues. If you get errors or unexpected behavior try the following:
clear_cache!(), restart the Julia session and, try again.
- If you still get issues, manually delete the cache files at
BiGGReactions.cache_location, restart the Julia session, and try again.
- File an issue :/