PhyloModels.jl

Phylogenetic simulation and inference in Julia
Author jangevaare
Popularity
3 Stars
Updated Last
1 Year Ago
Started In
November 2016

PhyloModels.jl

DOI Latest Release License Build Status codecov.io

PhyloModels.jl is a package for performing genetic sequence simulation from specified phylogenetic trees (using PhyloTrees.jl for phylogenetic tree specification, and SubstitutionModels.jl for nucleic acid substitution model specification), and for loglikelihood calculation of phylogenetic trees using Felsenstein's tree pruning algorithm¹.

¹ Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of molecular evolution, 17(6), 368-376.

Installation

The current release can be installed from the Julia REPL with:

pkg> add PhyloModels

The development version (master branch) can be installed with:

pkg> add PhyloModels#master

Used By Packages

No packages found.