RNAForecaster is based on a neural network that is trained using ordinary differential equations solvers (neural ODEs). See https://arxiv.org/abs/1806.07366 for details on neural ODEs. The goal of this method is to forecast future expression levels in a cell given transcriptomic data from said cell over short to intermediate time periods.

For more details about the RNAForecaster method, see the preprint on BioRXiv

• Documentation:

Download Julia 1.6 or later, if you haven't already.

You can add RNAForecaster from using Julia's package manager, by typing ] add RNAForecaster or ] add https://github.com/rossinerbe/RNAForecaster.jl in the Julia prompt.