Dependency Packages
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VariantCallFormat.jl13Read and write VCF and BCF files
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TrajGWAS.jl13-
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PhyloCoalSimulations.jl13-
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Pseudoseq.jl13Fake genomes, fake sequencing, real insights.
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KmerAnalysis.jl12K-mer counting algorithms and count-data utilities for the BioJulia framework
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GFF3.jl12-
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ReadDatastores.jl11Datastores for reads, not your papa's FASTQ files.
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JavisNB.jl11Notebook integrations for Javis.jl
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LuxorGraphPlot.jl11A minimum Luxor backended graph visualization package.
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BioFetch.jl10Easily fetch biological sequences from online sources
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BraketSimulator.jl10-
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QuartetNetworkGoodnessFit.jl9Julia package for phylogenetic networks analyses using 4-taxon subsets.
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GenomicVectors.jl9Computations on genome locations, inspired by BioConductor.
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DesignStructureMatrix.jl9Tools for Design Structure Matrix
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BurrowsWheelerAligner.jl8Binding for bwa
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OpenADMIXTURE.jl7-
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Knockoffs.jl6Variable Selection with Knockoffs
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BED.jl6-
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PhyloDiamond.jl6Method to estimate phylogenetic networks from algebraic invariants
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PopGenCore.jl6Core utilities for PopGen.jl, including the PopData type and file IO
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LinearFold.jl6Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold
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YOLOv7.jl5-
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BigWig.jl5-
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BioRecordsProcessing.jl5Process your biological records with ease
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BioStockholm.jl5Julia parser for the Stockholm file format (.sto) used for multiple sequence alignments (Pfam, Rfam, etc)
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CUBScout.jl5Codon Usage Bias in Julia
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SpeedDate.jl5Estimation of coalescence times between sequences.
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PlotRNA.jl4Plot nucleic acid secondary structures with Julia
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TheNumberLine.jl4The Number Line is a common teaching tool for Math classes (K-12)
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EindhovenLogo.jl4JuliaLang Eindhoven logo source code
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BigBed.jl4-
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PhyloGaussianBeliefProp.jl4Analysis of Gaussian models on phylogenetic networks using belief propagation (aka message passing)
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BBI.jl4-
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SimpleStatics.jl3-
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DashBioUtils.jl3-
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CAOS.jl3Julia implementation of the characteristic attribute organization system (CAOS) algorithm
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PopGenSims.jl3Create population genetics simulations
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MPITestImages.jl3Test images for evaluating MPI simulation frameworks.
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Miter.jl3A Julia plotting package using the PGF Basic Layer Core.
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KmerAnalysisMakie.jl3Makie recpies for visualising KmerAnalysis types and results.
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