Dependency Packages
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DiffEqTutorials.jl713Tutorials for doing scientific machine learning (SciML) and high-performance differential equation solving with open source software.
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Catlab.jl606A framework for applied category theory in the Julia language
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DiffEqBiological.jl455Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
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Soss.jl414Probabilistic programming via source rewriting
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HomotopyContinuation.jl181A Julia package for solving systems of polynomials via homotopy continuation.
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GameTheory.jl123Algorithms and data structures for game theory in Julia
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Semagrams.jl93A graphical editor for graph-like structures
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SemanticModels.jl77A julia package for representing and manipulating model semantics
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AlgebraicPetri.jl72Build Petri net models compositionally
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AlgebraicDynamics.jl65Building dynamical systems compositionally
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StockFlow.jl63-
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BEAST.jl54Boundary Element Analysis and Simulation Toolkit
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HarmonicBalance.jl53A Julia package for solving nonlinear differential equations using the harmonic balance method.
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AlgebraicRelations.jl47Relational Algebra, now with more algebra!
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Decapodes.jl46A framework for composing and simulating multiphysics systems
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Petri.jl40A Petri net modeling framework for the Julia programming language
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SimpleGraphs.jl38Convenient way to handle simple graphs and digraphs
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NumericalRepresentationTheory.jl29-
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CombinatorialSpaces.jl28Simplicial sets and other combinatorial models of geometric spaces
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CompScienceMeshes.jl27Computational Geometry Foundations for Finite and Boundary Element Methods
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ParameterEstimation.jl27ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
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AlgebraicRewriting.jl24Implementations of algebraic rewriting techniques like DPO, SPO, SqPO.
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AlgebraicInference.jl18Bayesian inference on wiring diagrams.
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ACSets.jl18ACSets: Algebraic databases as in-memory data structures
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ReactiveDynamics.jl17A Julia package that implements a category of reaction (transportation) network-type dynamical systems.
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SossMLJ.jl15SossMLJ makes it easy to build MLJ machines from user-defined models from the Soss probabilistic programming language
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Fresa.jl14The Fresa Julia package for black-box optimization
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CSetAutomorphisms.jl12Automorphism groups for CSets - generalizing the nauty algorithm to a broad class of data structures
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SimpleGraphAlgorithms.jl11Additional algorithms for the `SimpleGraphs` module that rely on integer programming
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SimplePosets.jl9Simple partially ordered sets for Julia
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AlgebraicRL.jl9Reinforcement learning, compositionally
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DiagrammaticEquations.jl8-
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RegNets.jl8Regulatory networks
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SpinAdaptedSecondQuantization.jl7Julia package to do symbolic spin adapted second quantization.
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BellDiagonalQudits.jl6-
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Individual.jl6Tools to specify and simulate individual based models, using applied category theory
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DrawSimpleGraphs.jl6Drawing functions for `SimpleGraphs`
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TransportBasedInference.jl5A repository for adaptive transport maps
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DecomposingPolynomialSystems.jl5DecomposingPolynomialSystems.jl is a Julia package that decomposes (simplifies) a given polynomial system using tools from numerical algebraic geometry.
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Mazes.jl5Create grid mazes
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