Shuffle the string sequences such that the k-mer frequency is preserved in each string

DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.

Generate simulated DNA sequences for regulatory genomics problems

Load fasta files that contain DNA strings and process it for other downstream tasks

Threshold and p-value computations for Position Weight Matrices

Deep Unfolded Convolutional Dictionary Learning for motif discovery.

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Using a population of profiles to approximate the real motifs

Plot position weight matrices (PWM)

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Unfolded convolutional learning for motif discovery