Tools for working with Brain Imaging Data Structure (BIDS) from Julia.
For more info on BIDS, read the documentation
- Working with BIDS Directory easily
- Flexible usage - initialize single object as you wish
- Query to get the desired files
- Other utility functions such as
total_sessions,parse_fname,parse_path, etc.
julia> using BIDSTools
julia> layout = Layout("/path/to/bids/root/")
Layout:
root = /path/to/bids/root/
total subject = 125
total session = 137
total files = 2945
julia> for sub in layout.subjects
for ses in sub.sessions
for file in ses.files
# do something
end
end
end
julia> files = get_files(layout, path="Subtest", run="002")
1-element Array{File,1}:
File("/path/to/bids/root/sub-Subtest/ses-2/mrs/sub-Subtest_ses-2_acq-96inc_loc-pcg_spec-uns_run-002_mod-cosy_fid.tsv")