BioGraph.jl

A Julia package for handle genome graph in the GFA format.
Author nguyetdang
Popularity
11 Stars
Updated Last
6 Months Ago
Started In
February 2021

BioGraph.jl

Latest Release Build Status Documentation MIT license

Description

BioGraph is a Julia package for handle genome graph in the GFA format. It reads information from GFA input, extract simple bidirected graphs and find the longest linear path in those graphs.

Complete documentation is available here

Installation

You can install BioGraph from the julia REPL. Press ] to enter pkg mode, and enter the following:

add BioGraph

Examples of uses

A set of Jupyter books for the application on Asian rice genomes is available here