DiffusionGarnet.jl

using DiffusionGarnet
using DelimitedFiles
using Plots

# load the data of your choice (here from the text file located in https://github.com/Iddingsite/DiffusionGarnet.jl/tree/main/examples/1D, place it in the same folder as where you are running the code)
data = DelimitedFiles.readdlm("Data_Grt_1D.txt", '\t', '\n', header=true)[1]

Mg0 = data[:, 4]
Fe0 = data[:, 2]
Mn0 = data[:, 3]
Ca0 = data[:, 5]
distance = data[:, 1]
Lx = (data[end,1] - data[1,1])u"µm"  # length in x of the model
tfinal = 15u"Myr"  # total time of the model

# define the initial conditions in 1D of your problem
IC1D = InitialConditions1D(Mg0, Fe0, Mn0, Lx, tfinal)

# define the PT conditions
T = 900u"°C"
P = 0.6u"GPa"

# define a Domain struct containing the definition of your problem
domain1D = Domain(IC1D, T, P)

# solve the problem using DifferentialEquations.jl
sol = simulate(domain1D)

# you can now plot the solutions from the sol variable

anim = @animate for i = LinRange(0, sol.t[end], 100)
    l = @layout [a ; b]

    p1 = plot(distance, Fe0, label="Fe initial", linestyle = :dash, linewidth=1, dpi=200, title = "Timestep = $(round(i;digits=2)) Ma", legend=:outerbottomright, linecolor=1,xlabel = "Distance (µm)")
    p1 = plot!(distance, sol(i)[:,2], label="Fe",linecolor=1, linewidth=1)

    p2 = plot(distance, Mg0, label="Mg initial", linestyle = :dash, linewidth=1, dpi=200,legend=:outerbottomright,linecolor=2,xlabel = "Distance (µm)")
    p2 = plot!(distance, Mn0, label="Mn initial", linestyle = :dash, linewidth=1, linecolor=3)
    p2 = plot!(distance, Ca0, label="Ca initial", linestyle = :dash, linewidth=1, linecolor=4)
    p2 = plot!(distance, sol(i)[:,1], label="Mg",linecolor=2, linewidth=1)

    p2 = plot!(distance, sol(i)[:,3], label="Mn", linecolor=3, linewidth=1)

    p2 = plot!(distance, 1 .- sol(i)[:,1] .- sol(i)[:,2] .- sol(i)[:,3], label="Ca", linecolor=4, linewidth=1)

    plot(p1, p2, layout = l)
end every 1

println("Now, generating the gif...")
gif(anim, "Grt_1D.gif", fps = 7)
println("...Done!")