Dependency Packages
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AutomationLabsExportation.jl1Advanced exports management for AutomationLabs.jl
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ActinFriction.jl1A Julia package for simulating the dynamics of passively crosslinked actin rings.
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ApproxMasterEqs.jl1This Julia package performs the numerical integration of two Approximated Master Equations on networks: the Cavity Master Equation and the Conditional Dynamic Approximation
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ReactionNetworkEvolution.jl1This package simplifies evolutionary algorithms for applications in systems biology. It can be used to generate oscillating reaction networks, networks that match input timeseries data, or fit parameters (rateconstants).
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PhysiologyModeling.jl1-
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SimpleBoundaryValueDiffEq.jl1-
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HardwareAbstractions.jl1The gap between theory and practice is in practice greater than in theory.
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GuidedProposals.jl1Implementation of Guided Proposals (introduced by M Schauer, F van der Meulen, H van Zanten)
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GeneralizedSDistributions.jl1A family of distributions that can serve as statistical models for unimodal distributions.
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GasChromatographySystems.jl1A package for the simulation of gas chromatography (GC) in complex systems
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PowerDynSolve.jl1Subpackage of PowerDynamics.jl providing the functionality to solve/simulate the built models
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Aerosol.jl1Models of aerosol chemistry and physics using ModelingToolkit.jl
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EpithelialDynamics1D.jl1Simulations of epithelial dynamics in 1D.
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PathWeightSampling.jl1Julia implementation of Path Weight Sampling (PWS) to compute information transmission rates
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NestedEnvironments.jl1-
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DynamicBoundspODEsDiscrete.jl1Valid Discrete-Time Methods for Relaxing pODEs
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ReducedBasisMethods.jl1Reduced Basis Methods for Particle Systems
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PooksoftAssetModelingKit.jl1Julia package for different types of asset return or price models
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DifferentiableBackwardEuler.jl1Automatically Differentiate the backward Euler method
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SynapseElife.jl1Model associated to Elife paper Rodrigues et al. 2023
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ModelOrderReductionToolkit.jl1-
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ProcessBasedModelling.jl0Build equations with informative errors for missing variables by explicitly assigning a process to each variable of the equations
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ProbabilisticParameterEstimators.jl0Parameter estimation under uncertainty.
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Anatta.jl0-
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MTKHelpers.jl0Helper functions with ModelingToolkit
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ScatteringOptics.jl0A Julia package to simulate and model interstellar scattering in strong regime.
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IntegratedOscillatorModel.jl0-
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InstantFrame.jl0Fast 3D frame structural analysis
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IndirectTrajOpt.jl0-
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GalacticPotentials.jl0Common galactic potential models as ModelingToolkit systems!
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FSInteraction.jl0A framework for simulating dynamical structures coupling with viscous incompressible flows
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EnvironmentalTransport.jl0Algorithms for the transport of mass and energy in the environment
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DynamicModelTestUtils.jl0A simple package for MTK-based model testing
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SurfaceCoverage.jl0A package for the calculation of steady state coverages for a given gas composition, T and p
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SurfaceReactions.jl0This package is a part of RSim, however, may also be used as an independent package for the calculation of source terms from an xml mechanism input file
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TKTDsimulations.jl0Julia simulation package for TKTD models
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BioMASS.jl0Julia interface to BioMASS
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BenchmarkEnvironments.jl0Standard environments for benchmarking the performance of RL algorithms.
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TruncatedMVN.jl0Reimplementation of a truncated multivariate distribution with fast, exact minimax-tilting based sampling.
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TumorGrowth.jl0Simple predictive models for tumor growth, and tools to apply them to clinical data
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