Bioinformatics Packages
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Rosalind.jl0A bioinformatics library for solving problems from rosalind.info.
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Bioinformatics.jl0[DEPRECATED] I deleted this repo a while ago. Forked backup from https://github.com/UnofficialJuliaMirror/Bioinformatics.jl-c429c406-9079-5a14-8339-dedc8835de90.
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EMIRT.jl2Electronic Microscopy Image Reconstruction Toolbox using julia language
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MMTF.jl7A julia package to parse and write MMTF file
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NormalizeQuantiles.jl7NormalizeQuantiles.jl implements quantile normalization
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Crispulator.jl13✂️ Pooled CRISPR screen optimization tool
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Pipelines.jl28A lightweight and powerful Julia package for computational pipelines and workflows.
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GeneticVariation.jl34Datastructures and algorithms for working with genetic variation
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BioMakie.jl36User interface tools for bioinformatics.
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PopGen.jl37Population Genetics in Julia
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NetworkInference.jl40Methods for inferring undirected networks from data
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FASTX.jl43Parse and process FASTA and FASTQ formatted files of biological sequences.
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GpABC.jl50-
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MIToS.jl63Mutual Information Tools for protein Sequence analysis in Julia
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VariantVisualization.jl69Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
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Circuitscape.jl115Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
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BioSequences.jl130Biological sequences for the julia language
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Bijectors.jl160Implementation of normalising flows and constrained random variable transformations
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Bio.jl258[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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DiffEqBiological.jl342Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software
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