Biofilm.jl

Documentation is available at: https://markowkes.github.io/Biofilm.jl

1. Install Julia
   • Follow instructions at https://julialang.org/
2. Add Biofilm.jl package
   • Start Julia from the terminal using >> julia
   • Add Biofilm.jl using julia> using Pkg; Pkg.add("Biofilm"). Note this will take many minutes to complete as many dependent packages will need to be downloaded and compiled.
3. Run an example
   • Download Case1.jl by right clicking and choosing Save Link As. Save the file to your Downloads folder (or other location of your choice)
   • In the terminal, change the directory to the location you downloaded Case1.jl e.g., >> cd ~/Downloads
   • Start Julia in that directory using >> julia
   • Run the example using julia> include("Case1.jl"). Note that the first time you run this command it may take a long time since it needs to compile Biofilm.jl.
4. Edit Case 1 or try other examples.

More detailed installation instructions are available in the documentation.