Tapestree.jl

Unravelling the evolutionary tapestry: Tapestree is a Julia package of phylogenetic analyses of diversification, trait and biogeographic dynamics.

See the Documentation for examples and manual.

References

For the TRIBE model:

1. "Trait and Range Interspecific Biogeographic Evolution" (TRIBE): which implements a joint model of trait evolution and biogeographic history as described in Quintero, I., & Landis, M. J. (2020). Interdependent phenotypic and biogeographic evolution driven by biotic interactions. Systematic biology, 69(4), 739-755. https://doi.org/10.1093/sysbio/syz082

For the ESSE model:

2. "Environmental and State dependent Speciation and Extinction" (ESSE): which implements a joint geographic and environmental model of diversification as described in Quintero, I., Landis, M. J., Jetz, W., & Morlon, H. (2022). The build-up of the present-day tropical diversity of tetrapods. Proceedings of the National Academy of Sciences, 2023. 120 (20) e2220672120. https://doi.org/10.1073/pnas.2220672120