Dependency Packages

RealTimeAudioDiffEq.jl7A Julia package for realtime audification of ODEs and SDEs

TemporalNetworks.jl0

NoiseModels.jl1Noise modeling

TruncatedMVN.jl0Reimplementation of a truncated multivariate distribution with fast, exact minimaxtilting based sampling.

ProbabilisticParameterEstimators.jl0Parameter estimation under uncertainty.

ApproxMasterEqs.jl1This Julia package performs the numerical integration of two Approximated Master Equations on networks: the Cavity Master Equation and the Conditional Dynamic Approximation

ExactFieldSolutions.jl7Full field solutions of Poisson and Stokes problems in 1D, 2D and 3D. Full field solutions to other problems are welcome!

ModelingToolkitNeuralNets.jl22SymbolicNumeric Universal Differential Equations for Automating Scientific Machine Learning (SciML)

DynamicModelTestUtils.jl0A simple package for MTKbased model testing

FMIBase.jl5FMIBase.jl provides the foundation for the Julia packages FMIImport.jl and FMIExport.jl.

BaseModelica.jl5Importers for the BaseModelica standard into the Julia ModelingToolkit ecosystem

AccessibleOptimization.jl3

SimpleBoundaryValueDiffEq.jl1

OptimizationBase.jl14The base package for Optimization.jl, containing the structs and basic functions for it.

ConceptualClimateModels.jl7ConceptualClimateModels.jl is a Julia package for creating and analysing conceptual models of climate, such as energy balance models, glaciation cycle models, or climate tipping models.

ProcessBasedModelling.jl0Build equations with informative errors for missing variables by explicitly assigning a process to each variable of the equations

TumorGrowth.jl0Simple predictive models for tumor growth, and tools to apply them to clinical data

GeoEnergyIO.jl7Parsers and processing for geoenergy data file formats in Julia.

ILMPostProcessing.jl2Tools for postprocessing solutions of immersed layer PDEs

FMIExchange.jl10

SphereUDE.jl2A Julia package for regression in the sphere based on Universal Differential Equations

IERSConventions.jl1IERS Conventions made easy.

ChaoticDynamicalSystemLibrary.jl8A collection of chaotic ODEs.

ModelOrderReductionToolkit.jl1

Kinbiont.jl2Ecosystem of numerical methods for microbial kinetics data analysis, from preprocessing to result interpretation.

ActiveInference.jl5Julia Package for Active Inference

MeshGraphNets.jl18MeshGraphNets.jl is a software package for the Julia programming language that provides an implementation of the MeshGraphNets framework by Google DeepMind for simulating meshbased physical systems via graph neural networks.

Pioran.jl4Power spectrum inference of irregularly sampled time series using Gaussian Processes in Julia

DynamicOED.jl10Optimal experimental design of ODE and DAE systems in julia

StateSpacePartitions.jl2Automatic partitions of state space from a dynamical system

SBMLImporter.jl16Import dynamic models in the SBML format into a ReactionSystem for Gillespie, SDE and ODE simulations

EnvironmentalTransport.jl0Algorithms for the transport of mass and energy in the environment

SafetySignalDetection.jl5Bayesian Safety Signal Detection in Julia

KernelInterpolation.jl9Multivariate (generalized) scattered data interpolation with symmetric (conditionally) positive definite kernel functions in arbitrary dimension

ReactionNetworkEvolution.jl1This package simplifies evolutionary algorithms for applications in systems biology. It can be used to generate oscillating reaction networks, networks that match input timeseries data, or fit parameters (rateconstants).

SimulationBasedInference.jl15A flexible toolkit for simulation based inference in Julia

GalacticPotentials.jl0Common galactic potential models as ModelingToolkit systems!

BarBay.jl2Repository for the BarBay Julia package for Bayesian inference of relative fitness on barcode sequencing data.

JointSurvivalModels.jl12Julia implementation of joint models combining longitudinal and survival endpoints

PositiveIntegrators.jl13A Julia library of positivitypreserving time integration methods
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