Biology Packages
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GenomicTiles.jl0-
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PseudoGenomes.jl0-
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Pagel.jl2Detect correlated evolution on phylogenies
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GenomeAnnotations.jl1Manage Local Genome Annotation files
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BioFeatures.jl0-
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YARS.jl0YARS communication for julia
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OBC.jl0Optimal Bayesian classification for RNA-Seq data
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COSMIC.jl0-
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BismarkSummary.jl0-
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PureSeq.jl1Code for the Pure-seq project
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Rosalind.jl0A bioinformatics library for solving problems from rosalind.info.
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VariantCall.jl1-
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BioArgParse.jl3Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.
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AlignmentStatistics.jl2-
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HyperNEAT.jl2HyperNEAT
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SpikeSorter.jl7Spike sorting tools written in Julia, which may be of use to experimental neuroscientists
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Ensemble.jl2Ensemble Samplers for Julia
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StatGenData.jl1Statistical analysis of genomic data
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SkullSegment.jl3Macaque brain and skull extraction tools (WIP)
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FastaIO.jl10Utilities to read/write FASTA format files in Julia
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ProgressiveAligner.jl7Progressive alignment scripts for protein sequences
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Iceberg.jl1Ice-seawater interface calculations using level set methods
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MicroscopyLabels.jl3Easily embed annotations in your microscopy images
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EvoDuplexes.jl2A Julia package to fold all local and long-range RNA duplexes.
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Bioinformatics.jl0[DEPRECATED] I deleted this repo a while ago. Forked backup from https://github.com/UnofficialJuliaMirror/Bioinformatics.jl-c429c406-9079-5a14-8339-dedc8835de90.
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SpeedDate.jl4Estimation of coalescence times between sequences.
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MindResearchRepository.jl3Access data sets from the Mind Research Repository
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EMIRT.jl2Electronic Microscopy Image Reconstruction Toolbox using julia language
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VarianceComponentTest.jl4Exact Variance Component Test for GWAS
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OpenEphysLoader.jl6A set of tools to load data written by the OpenEphys GUI
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MendelBase.jl5MendelBase contains the base functions of OpenMendel.
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MMTF.jl7A julia package to parse and write MMTF file
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Gillespie.jl60Stochastic Gillespie-type simulations using Julia
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ROC.jl16Receiver Operating Characteristic (ROC) Curve for Julia Language
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GBIF.jl17Functions and types to access GBIF data from Julia
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CellFishing.jl42Fast and scalable cell search tool
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FishABM.jl3An agent based life cycle model for managed fisheries
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NetworkInference.jl40Methods for inferring undirected networks from data
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BioServices.jl19Julia interface to APIs for various bio-related web services
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LeafAreaIndex.jl8Package to calculate Leaf Area Index from Hemisperical Images.
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