Molecular simulation in Julia

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

Biological sequences for the julia language

A Julia package to read, write and manipulate macromolecular structures

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

A Julia package to analyze protein sequences, structures, and evolutionary information

A modern genomics framework for julia

Parse and process FASTA and FASTQ formatted files of biological sequences.

Sequence alignment tools

Plotting and interface tools for biology.

Datastructures and algorithms for working with genetic variation

Parse and process SAM and BAM formatted files

In development: Kmer types and methods for julia

MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules

Biological Sequence Substitution Models for Julia

Display utilities for phylogenetic trees and networks

Package that provides a integrated Julia workflow for molecular dyanmics simulations.

Julia package for visualising genomic data

A Gene Finder framework for Julia.

Interfaces to common external biological tools from julia scripts and programs

-

A Julia package for working with the Quranic Arabic Corpus.

-

The Biochemical Algorithms Library in Julia

A Julia package for estimating phylogenetic networks from genomic data

Protein ribbon plots implemented in Julia using Makie

Fake genomes, fake sequencing, real insights.

-

K-mer counting algorithms and count-data utilities for the BioJulia framework

Datastores for reads, not your papa's FASTQ files.

A Julia package for handle genome graph in the GFA format.

Easily fetch biological sequences from online sources

Support for working with 2Bit formatted sequence data files

Julia package for phylogenetic networks analyses using 4-taxon subsets.

Biological sequence variation

Computations on genome locations, inspired by BioConductor.

Binding for bwa

Representing biological sequences as Markov chains

A lightweight Arabic NLP toolkit