[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

Biological sequences for the julia language

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

A modern genomics framework for julia

Parse and process FASTA and FASTQ formatted files of biological sequences.

Sequence alignment tools

Plotting and interface tools for biology.

Datastructures and algorithms for working with genetic variation

Parse and process SAM and BAM formatted files

In development: Kmer types and methods for julia

Display utilities for phylogenetic trees and networks

Julia package for visualising genomic data

A Gene Finder framework for Julia.

Interfaces to common external biological tools from julia scripts and programs

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A Julia package for estimating phylogenetic networks from genomic data

Fake genomes, fake sequencing, real insights.

A Julia package for working with the Quranic Arabic Corpus.

K-mer counting algorithms and count-data utilities for the BioJulia framework

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A Julia package for handle genome graph in the GFA format.

Datastores for reads, not your papa's FASTQ files.

Easily fetch biological sequences from online sources

Biological sequence variation

Computations on genome locations, inspired by BioConductor.

Support for working with 2Bit formatted sequence data files

Julia package for phylogenetic networks analyses using 4-taxon subsets.

Binding for bwa

A lightweight Arabic NLP toolkit

Easy-to-use biological sequence tools working with DNA, RNA and aminoacid sequences.

Representing biological sequences as Markov chains

Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold

Method to estimate phylogenetic networks from algebraic invariants

Process your biological records with ease

Codon Usage Bias in Julia

Estimation of coalescence times between sequences.

Analysis of Gaussian models on phylogenetic networks using belief propagation (aka message passing)

Makie recpies for visualising KmerAnalysis types and results.