Dependency Packages
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Molly.jl389Molecular simulation in Julia
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Bio.jl261[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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PhyloNetworks.jl155A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
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BioStructures.jl93A Julia package to read, write and manipulate macromolecular structures
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GeneticsMakie.jl77🧬High-performance genetics- and genomics-related data visualization using Makie.jl
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MIToS.jl74A Julia package to analyze protein sequences, structures, and evolutionary information
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GenomeGraphs.jl67A modern genomics framework for julia
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FASTX.jl61Parse and process FASTA and FASTQ formatted files of biological sequences.
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BioAlignments.jl60Sequence alignment tools
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BioMakie.jl56Plotting and interface tools for biology.
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PopGen.jl46Population Genetics in Julia
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SnpArrays.jl44Compressed storage for SNP data
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GenomicFeatures.jl32Tools for genomic features in Julia.
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XAM.jl27Parse and process SAM and BAM formatted files
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MendelImpute.jl24OpenMendel package for haplotyping and imputation
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MendelIHT.jl22Iterative hard thresholding for l0 penalized regression
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OrdinalGWAS.jl21Genome-wide association studies (GWAS) for ordered categorical phenotypes
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MDToolbox.jl20MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules
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VCFTools.jl18Julia utilities for handling VCF files
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PhyloPlots.jl16Display utilities for phylogenetic trees and networks
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Atomistic.jl15Package that provides a integrated Julia workflow for molecular dyanmics simulations.
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GeneFinder.jl15A Gene Finder framework for Julia.
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GenomicMaps.jl15Julia package for visualising genomic data
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GenomicAnnotations.jl14-
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BioTools.jl14Interfaces to common external biological tools from julia scripts and programs
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BiochemicalAlgorithms.jl13The Biochemical Algorithms Library in Julia
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VariantCallFormat.jl13Read and write VCF and BCF files
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ProtPlot.jl13Protein ribbon plots implemented in Julia using Makie
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Pseudoseq.jl13Fake genomes, fake sequencing, real insights.
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PhyNEST.jl13A Julia package for estimating phylogenetic networks from genomic data
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QuranTree.jl13A Julia package for working with the Quranic Arabic Corpus.
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PhyloCoalSimulations.jl13-
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TrajGWAS.jl13-
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KmerAnalysis.jl12K-mer counting algorithms and count-data utilities for the BioJulia framework
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GFF3.jl12-
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ReadDatastores.jl11Datastores for reads, not your papa's FASTQ files.
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BioFetch.jl10Easily fetch biological sequences from online sources
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QuartetNetworkGoodnessFit.jl9Julia package for phylogenetic networks analyses using 4-taxon subsets.
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TwoBit.jl9Support for working with 2Bit formatted sequence data files
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SequenceVariation.jl9Biological sequence variation
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