🧲Ising Model solvers in Julia

Library for generating and visualizing lattices for use in constructing Hamiltonians

Differential Inequality Algorithms for Parametric ODEs

Classification algorithms based on kernel nearest centers

Package to estimate a minimum edge-disjoint edge clique cover (EECC) of a graph

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Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl

Matrix Product Belief Propagation

Yet another package for graphs with metadata (unmaintained)

Support for reading MetaImage files in Julia

Phylogenetic trees with metadata by Julia based on Graphs.jl and AbstractTrees.jl.

Population dynamics across space, in Julia.

Utilities to test implementations of the MLJ model interface and provide integration tests for the MLJ ecosystem

One package to train them all

Monotone Cubic B-Splines (arXiv:2307.01748)

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A Julia package to solve multi-state system models, often found in reliability engineering.

Load and save Netpbm images in Julia

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Repo for the CloudGraphs project.

Extend Graphs.jl to manipulate periodic graphs

Linear periodic time-varying systems tools in Julia

Estimating the transfer operator (Perron Frobenius operator) and invariant measures from time series.

Phylogenetic Estimation of Shifts in the Tempo of Origination

Analysis of Gaussian models on phylogenetic networks using belief propagation (aka message passing)

Power spectrum inference of irregularly sampled time series using Gaussian Processes in Julia

Causal forests following HTERF method and their interpretabilty

Everything 3D for plants 🌱

Package for generating and parsing .pomdpx files for SARSOP

A Julia package for building, and running Biochemical Systems Theory (BST) models

Tools for Visualization of Quantum Annealing

Bitstream computing got you a bit sad? Just use BitSAD!

This package models the dynamics of a biofilm using the Julia programming language.

A library for revealed preferences and rationality analysis using Julia.

A Julia solver of Ring Star Problem variants

A Julia package to provide RML imaging methods for high-resolution radio interferometry

Functions to run the SBML Test Suite with SBMLToolkit, create logs and create reports for the SBML Test Suite Database

Julia-language port of the Sequencer algorithm, originally developed in python (https://github.com/dalya/Sequencer). The Sequencer finds trends in 1-dimensional data sets and has been used by its original authors for data analysis in astrophysics, seismology, image processing, etc. Contributions are welcome!

Series-expansion thermal tensor network (SETTN)

Convenience interfaces to Triangulate.jl and TetGen.jl