Biology Packages
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GenomeAnnotations.jl1Manage Local Genome Annotation files
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GenomeGraphs.jl67A modern genomics framework for julia
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GenomicTiles.jl0-
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Gillespie.jl60Stochastic Gillespie-type simulations using Julia
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GpABC.jl54-
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HyperNEAT.jl1HyperNEAT
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Iceberg.jl1Ice-seawater interface calculations using level set methods
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IntervalTrees.jl44A data structure for efficient manipulation of sets of intervals
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JWAS.jl96Julia for Whole-genome Analysis Software
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LCS.jl7A Julia package for finding longest common and longest contiguous subsequences
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LeafAreaIndex.jl10Package to calculate Leaf Area Index from Hemisperical Images.
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MendelBase.jl5MendelBase contains the base functions of OpenMendel.
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MerCounting.jl12K-mer counting algorithms and count-data utilities for the BioJulia framework
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Microbiome.jl47For analysis of microbiome and microbial community data
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MicroscopyLabels.jl2Easily embed annotations in your microscopy images
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MindResearchRepository.jl3Access data sets from the Mind Research Repository
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MIToS.jl74A Julia package to analyze protein sequences, structures, and evolutionary information
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MMTF.jl8A Julia package to read and write MMTF files
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NEAT.jl24Julia implemention of NEAT (NeuroEvolution of Augmenting Topologies) algorithm
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NetworkInference.jl43Methods for inferring undirected networks from data
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NeuroAnalysis.jl12Neural Signal Analysis
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Neuroimaging.jl48Neuroimaging in Julia
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NormalizeQuantiles.jl7NormalizeQuantiles.jl implements quantile normalization
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OBC.jl0Optimal Bayesian classification for RNA-Seq data
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OpenEphysLoader.jl7A set of tools to load data written by the OpenEphys GUI
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OpenGene.jl64(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
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OrbitTomography.jl2-
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Pagel.jl2Detect correlated evolution on phylogenies
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Pathogen.jl72Simulation, visualization, and inference of individual level infectious disease models with Julia
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Pedigree.jl0Pedigree functions implemented in Julia
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PhyloNetworks.jl155A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
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PhyloTrees.jl22Phylogenetic trees in Julia
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Pipelines.jl46A lightweight and powerful Julia package for computational pipelines and workflows.
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PopGen.jl46Population Genetics in Julia
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ProgressiveAligner.jl8Progressive alignment scripts for protein sequences
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PseudoGenomes.jl0-
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PureSeq.jl1Code for the Pure-seq project
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RealNeuralNetworks.jl38A unified framework for skeletonization, morphological analysis, and connectivity analysis.
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ROC.jl17Receiver Operating Characteristic (ROC) Curve for Julia Language
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Rosalind.jl1A bioinformatics library for solving problems from rosalind.info.
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